Couple of points for you, Adrian:
The completed engine, properly reassembled, will fire and run with your new bean can ITC positioned in the middle of its range of adjustment. No damage will occur while you run through the ignition timing drill.
As far as piston install, the valve pockets on the piston domes should be matched up with the valve sizes in the cylinder heads. That's an easy confirmation should the 'barely there' arrows be difficult to see.
Rather than paying your mechanic extra labor charges as he/she figures out assembly alignments, permanently mark areas that could be assembled incorrectly. Be sure to point out these locations to your mechanic. Do not assume they will be understood.
Glad to hear you're getting back to your R65 project. Continue in good health, old friend.