Problem with brake calipers, is that usually, the motorcycle manufacturer has their own part number for the caliper, they don't use the Brembo part number, so it is difficult to cross reference the calipers between bikes  .
The first issue, is the dimension between the mounting holes in the caliper they are not the same between Brembo calipers  .
The OEM Brembo calipers on the  R65, are 36 mm diameter pistons the larger bikes had larger pistons, 38 or 40 mm if I remember correctly .
So like nhmaf has stated, your master cylinder may or may not work well with different calipers with a larger diameter piston .
BMW had 3 or 4 different master cylinders with different  piston diameters, so you need to most likely to match the two, to work properly .
EDIT : Â Did a search for Brembo BMW motorcycle caliper cross reference, this is what I found, hope it may help you out .
http://www.thisoldtractor.com/brembo_brembo_brake_and_clutch_cross_reference_for_bmw_motorcycles.htmlFrom the look of the chart, the calipers on the R65, were pretty much specific to the R65 .