Mine's clean now, too, though still not as clean as yours. I tucked everything back together yesterday, but I suspect I wasted all that time. My old timing chain, tensioner, and guide all looked nearly like new, at 97,000 miles. That's probably what happens when you spend almost no time idling in traffic -- plenty of oil moving through there. I saw nothing that could explain the rattling sound. The mufflers pled innocent.
I did notice that my neutral switch has started leaking but I don't think that's related. I need to find a plug that will fit there, as I don't use the switch except to stop oil from running out that hole.
I'm waiting for the Beemershop to call me back so I can order an oil pan gasket and some other stuff.
When I started the bike up to make sure the timing was still good, it sounded fine. My timing mark still jumps around a bit at higher rpms. I wonder if I have some play in my bean can or something. I'm tempted to just ride the thing until the rattling starts again and try harder to isolate it, but I fear doing $$$$$ damage.