Well, while you are at it, you should check your valve lash if you haven't done so. Tight valves will make a bike hard to start because if they get tight enough you lose compression. Once you check the lash on a cold (hasn't been run since the day before) engine, do a compression test and make sure you have good compression.
When you dunked your carbs as a whole assembly, what did you dunk them in? A strong solvent could have damaged the o-rings on your jets. When you say you "rebuilt" the carbs, does that mean you replaced all the rubber, or just took them apart, cleaned, and reassembled?
For good measure, make sure you have a good, strong, blue spark.
Also, if you don't have an in-line fuel filter, install one. It's possible that you are letting bits of rust, crud, and old tank liner into your carbs after you clean them.