I've got Rick Jones Boxer Charging manual, and it states the three wires from the alternator plug to the diode can be connected in any order .
If you look at the alternator plug, and the diode board , can you see any letters at the terminals like W, V, U ?
That's what the wiring diagram shows, so if you can find co-responding letters on each component, connect the wires to the appropriate letters on each .