Ya, that location at least seems like the usual/common right upper side spot that usually gets shorted out when removing the cover. But, it could have just been a marginal solder joint or failed diode of its own With the amount of current needed to blacken and separate those heavy traces on the board, there was definitely a substantial short for some time. I'd definitely get a new ( or good used) diode board assembly, as a number of the diodes , and traces may have been compromised. You would have to take them all out and test them and know how to spot one that is not completely ruined yet - too much effort and potential for recurring faults, IMHO.
Rick at Motorrad elektrik will set you up with a nice aftermarket unit - I have one in my R65LS - but, you'll have to contact him quickly cause he'll probably be headed to the rally in Missouri very soon!