Have you considered dual fuel taps instead of a pump?
The stock carbs should be able to sustain high rpms. I've got no problems running my street bike at 6k down the highway for 15 minute stretches. Sounds like your old r65 might have had a bad diaphragm or obstructed fuel tap.
Once you get the bike up and running, you can do the roll-off test to help you home in on the right jet size. I believe this description of the test is from Mikuni USA:
"ROLL-OFF:
The Roll-Off technique is the quickest and is almost as accurate as the Roll-On method. First, one gets the engine warm on the way to a safe roadway. If there is room, use fourth gear as this allows more time to assess the result.
Now, get the engine rpm high enough that it is on the cam and in its power band. This may need to be as high as 4000 rpm with some cam choices. Apply full throttle. Let the engine accelerate for a couple of seconds until it has settled in and is pulling hard. Quickly roll the throttle off to about the 7/8ths position. When you do this, the mixture richens slightly for a second or so.
If the engine gains power as you roll the throttle off, then the main jet is too small and you need to fit a larger one.
If the engine staggers slightly or has a hard hesitation, then the main jet is too large and you need to fit a smaller one."
You can also carefully play with the ignition advance for a bit more power.