Monte - I don't think there's one farther from the MC than the other - there's a splitter and both lines take off from there. I think they're equal length.
As for bleeding the MC - you won't get all the air out of it, and you won't be able to get it so it doesn't leak putting the line back on. However, once the MC is pretty well purged, replace the brake line, and then bleed the connection like you would a bleeder - squeeze the lever, crack the connection, close, let the lever back.
Pull the brake lever gently. Build up pressure, and that sqeezes the air out. Don't pull much more than about half stroke - about the distance travelled in normal operation.
When strapping the lever to the bar, nothing else needs to be done - and definitely don't crack the bleeders!