In trying to visualize your off-idle stutter... Engine is at operating temperature and everything is fine except for the engine stutter as you're attempting to pull away from a stop sign, etc.
As I've followed most every line you've written about your R65, it sounds as if you have done everything per specification. But your concern continues...
When you worked on the Bings, did you remove/replace the butterfly valves in the carbs? There are older posts on different sites that discuss the importance of centering each brass plate within the bore of the carb's throat. If a throttle plate drags, it could create symptoms as you have described. If one butterfly is dragging -even a tiny bit- that Bing will be delayed in beginning the fuel delivery and create a stutter until it unsticks itself. Then, all's well until the next stop. At operating temps, heat expansion could be affecting the brass butterfly. Yes, I may be reaching here...
Pulling the carbs and shining a bright light into the throat should reveal an equidistant gap around the valve's circumference and the throat bore. If the butterfly drags, loosen the anchor screws a bit and re-center the valve.
This may be a stretch but I'm about stumped. Anybody? Monte