TV - It sounds like you might be onto the problem, there - I didn't think from your description that your exhaust system was different enough from stock to impact the mixture, but apparently it is.
Goo - maybe you have a leaking seat in your carb jet, or you've got a stuck float, from having the bowls overfilled with gas when the petcock was left on. Also, check your engine oil to see if you ended up with fuel getting into the cylinder and down into the crankcase. IF you smell gas from the dipstick /fill hole or the level shows that it is somehow higher than normal, you gotta drain and change the oil and oil filter or risk damage to the engine.