It is really only pre 1981 and post 1981 in terms of major changes.
The 1981 update saw bigger valves allowing BMW to untruthfully claim 50hp for the R65.
Other changes include -
Nicasil cylinders
Brembo brakes in place of ATE calipers
Hall effect ignition
Relocation of electrical services to RHS of main frame tube
Changes to the bottom pressing of the fuel tank to accommodate the new electrical services arrangement
Omission of the over-rev LED from the tacho (it never worked anyway)
Hall effect ignition
Double ended coil to work with the Hall effect system (the dreaded "crack-o-matic"
As you have already mentioned, changes to side and centre stand and changes to frame mounts to accommodate the new parts.
Rear ducktail and rear storage tray changed
Square master cylinder in place of round one.
Vastly improved rider footpeg mounts and gear linkage
Introduction of the "clutch carrier" in place of heavy steel flywheel (a massage vely retrograde stap on my view)
Gearbox input shaft shortened to suit clutch carrier.
I think the above is the major changes, there were minor detail changes such as fiddling with top put springs and other front fork damping components, but generally these were production changes to try and solve problems rather than fundamental changes.
After 1985 there were further massive changes as the R65 adopted the monoshock frame and was given the same wheelbase as it's bigger brethren.
Internally 1985 saw revised (and vastly improved) rocker arrangements.
From 1979 BMW fitted several different types of valve seats. All valve seats ever fitted to R65s are supposedly suitable for unleaded fuel, but some last better than others - if your valves are not receding use some lead replacement and leave them alone.
I will stop at this point, others will chime in.