Can you isolate the noise ??
Engine top end, transmission .
When you had the rocker covers off, did you happen to notice if any of the rocker arms had a greenish plastic insert at one end ?
Replacement rocker arms usually have this, I got one in 1983 when a needle bearing failed in one of the rocker arms you have to shim the rocker arm to get the correct end clearance, I had a 2-3 mm end gap with the new rocker arm and the side support .