They should be the same. Check your manual for any specs, but both my R65s -with the rubber top caps removed- are flush with the upper surface of the top triple clamp.
Go easy on hammering in those wedges. Should not take much at all. They triple clamps are castings and will give no warning before they might crack. A little penetrating oil or similar on the stanchion/clamp joint may help in removal. A twisting action helps.
Realigning the fork legs on the R65 is cake.