Hello Soeren,
It seems you own an R65 TIC for law enforcement people. As these guys use a radio, everything making interference mus be isolated. Hence the box to hold the coil.
I suppose you did not got the radio ? So you can/may remove these housing.
Plugging the coil is pretty straightforward.
You have a green/white double wire coming from the switches (positive) and a black double wire coming from the ignition unit and going to the tachometer. All additional wires are for the housing (brown wires are meant for grounding on DIN parlance) and can be disregarded, if I'm not mistaken.
Last but not least, you appear to have one of the infamous Crak-O-Matic BOSCH coil which will crack and fail sooner or later (at first, noticeable in rainy days). So may I suggest you go to a car wreck place and ask for a double coil. Bring a multi-meter with you and measure the resistance of the primary. The Grey Bosch coil has around 3 Ohm primary resistance, and the Bosch expensive replacement has a 0.5 Ohm resistance. So anything in between is good. It will cost you a few Euros for a couple and some effort to devise a suitable mounting contraption. I bought a couple from a Fiat Punto for 10 Euros the pair... with 0.8 Ohm resistance going strong on my 1982 R65.
Also check the insulation of the battery positive wire (the thick one) which get mangled by the central fairing support and can cause a fire if unchecked...