Looks like it could be the kill switch that's bought it.
Can't find the terminal numbers, but if you look at the relay socket as though you were sat on the bike, I'm getting a permanent live on the terminal in the holder at 9 o'clock and nothing else.
With the green and green/blue wires from the kill switch connected together I'm getting the permanent live at 9 o'clock plus a switched live at 3 o'clock.