Well, after a long winded post on your other thread, I saw this one.
Here's a way to sort things out.
With the forks still in the triple trees, remove the large slugs, held in with the C clip, from the top of the forks. You can remove the springs if you'd like. They might want to drip oil on nice painted parts. Try sliding the forks up and down. If they dont move smoothly, take off the front wheel. Now try to move each fork up and down separately. If both move smoothly on their own, then fork alignment is probably your problem. To fix this, put the wheel back on and play with the triple trees while loosely clamping the upper tubes until things move smoothly, and gradually tighten the clamp bolts down.
If one fork leg does not move smoothly on it's own there is an internal problem and you will have to take it back apart and figure out what is sticking. Perhaps a piece of the plastic bushing in there jammed something up or the sealing rings on the piston somehow bound. Or, (if it's possible) you put the piston in wrong. It should be dropped in through the upper fork leg and then bolted through the bottom.
The only other thing I could think of is that you didn't put the springs back in and both forks are bottomed out... but that would make the bike sit pretty low in the front and the big slugs in the upper tubes would have nothing to keep them pushed up.